- Wei Zhang, PhD student, Computer Science (co-advise with Baolin Wu)
- Huanan Zhang, PhD student, Computer Science
- David Roe, PhD student, BICB
- Raphael Petegrosso, PhD student, Computer Science
- Zhuliu Li, PhD student, Computer Science
- Nishitha Paidimukkala, PhD student, BICB (co-advise with Rebecca Morris)
- Catherine Lee, MS student, BICB
- Ze Tian, PhD, 2012. Microsoft-BING. Thesis: Learning with Kernels and Graphs to Understand Cancer DNA Copy Number Variations
- TaeHyun Hwang, PhD, 2011. Assistant Professor, University of Texas Southwestern Medical Center. Thesis: Network-based learning algorithms for understanding human disease
- Maoqiang Xie, Visiting scholar 2010-2011, Nankai University
- Changjin Hong, PostDoc, 2010
- Baryun Hwang, M.S., 2009.
Thesis: Finding Consistent Biomarkers from Independent Microarray Gene Expression.
- Thanh Le, B.S., 2012
- Xiang Yao, B.S., 2012
- Mila Gorodetsky, B.S., 2010, Thesis: A Constrained Label Propagation for
Biomarker Discovery in Genetic Data.