Publications:

• Brian Van Ness, Christine Ramos, Majda Haznadar, Antje Hoering, Jeff Haessler, John Crowley, Susanna Jacobus, Martin Oken, Vincent Rajkumar, Philip Greipp, Bart Barlogie, Brian Durie, Michael Katz, Gowtham Atluri, Gang Fang, Rohit Gupta, Michael Steinbach, Vipin Kumar, Richard Mushlin, David Johnson, Gareth Morgan, "Genomic Variation in Myeloma: Design, content, and initial application of the Bank On A Cure SNP Panel to analysis of survival", BMC Medicine, 6:26, 2008.

• R. Gupta, V. Venugopal, E. Foufoula-Georgiou, "A methodology for merging multi-sensor precipitation estimates based on expectation-maximization and scale recursive estimation", Journal of Geophysical Research - Atmospheres, Vol. 111, No. D2, D02102, 2006. (Also published as MSI Research Report).
  

• Petrus C. de Groen, Rohit Gupta, Brian Brownlow, Robert Domnick, Felicity Enders, Vipin Kumar, "Colorectal Cancer Despite Colonoscopy: Endoscopist-related Risk Factors", In Submission for New England Journal of Medicine.

• Rohit Gupta, Vipin Kumar, Petrus C. de Groen, "Colorectal Cancer Despite Colonoscopy: Patient-related Risk Factors", In Submission for New England Journal of Medicine.

• Smita Agrawal, Joe Peltier, Rohit Gupta, David Schaffer, "Notch1 Signaling And Its Downstream Effector Pathways In Adult Neural Stem Cell Fate Specification", In Submission for Journal of Neuroscience.

• Rohit Gupta, Ze Tian, Rui Kuang, Vipin Kumar, "Discovery of Active Sub-network Biomarkers Using Gene Expression Data and Protein Interaction Network", In Preparation for Bioinformatics.

• Rohit Gupta, Navneet Rao, Vipin Kumar, "Discovery of Error-tolerant Biclusters from Noisy Gene Expression Data", In Proceedings of 9th International Workshop on Data Mining in Bioinformatics (BIOKDD'10), to be held in conjunction with 16th ACM conference on knowledge discovery and data mining (KDD), Washington D.C, July 2010 (In Press). 

• Rohit Gupta, Rui kuang, Vipin Kumar, "Integrative Biomarker Discovery from Gene Expression and Protein-protein Interaction Data Using Error-tolerant Pattern Mining", Accepted, 18th Annual International Conference on Intelligent Systems in Molecular Biology (ISMB), July 2010 (Poster Presentation).

• Rohit Gupta, Smita Agrawal, Navneet Rao, Ze Tian, Rui Kuang, Vipin Kumar, "Integrative Biomarker Discovery for Breast Cancer Metastasis from Gene Expression and Protein Interaction Data Using Error-tolerant Pattern Mining", In Proceedings of the International Conference on Bioinformatics and Computational Biology (BICoB), March 2010 (Also published as CS Technical Report).

• Rohit Gupta, Michael Steinbach, Karla Ballman, Vipin Kumar, Petrus C. de Groen, "Colorectal Cancer Despite Colonoscopy: Critical Is the Endoscopist, Not the Withdrawal Time", [Abstract], Gastroenterology, Volume 136, Issue 5, Supplement 1, May 2009, Pages A-55. (Selected for oral presentation in clinical science plenary session in DDW 2009, Chicago). [Best Student Abstract Prize].

• Rohit Gupta, Michael Steinbach, Karla Ballman, Vipin Kumar, Petrus C. de Groen, "Colorectal Cancer Despite Colonoscopy: Estimated Size of the Truly Missed Lesions", [Abstract], Gastroenterology, Volume 136, Issue 5, Supplement 1, May 2009, Pages A-764. (Selected for poster presentation in DDW 2009, Chicago).

• Gaurav Pandey, Gowtham Atluri, Gang Fang, Rohit Gupta, Michael Steinbach, Vipin Kumar, "Association Analysis Techniques for Analyzing Complex Biological Data Sets", In Proceedings of the IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS), Minneapolis MN, USA, 2009..

• Gowtham Atluri, Rohit Gupta, Gang Fang, Gaurav Pandey, Michael Steinbach, Vipin Kumar, "Association Analysis Techniques for Bioinformatics Problems", In Proceedings of the International Conference on Bioinformatics and Computational Biology (BICoB), 2009 (Invited Paper).

• Rohit Gupta, Brian N. Brownlow, Robert A. Domnick, Gavin Harewood, Michael Steinbach, Vipin Kumar, Piet C. de Groen, "Colon Cancer Not Prevented By Colonoscopy", [Abstract], American Journal of Gastroenterology, 103, pp. S551-S552, 2008 (Selected for poster presentation in American College of Gastroenterology (ACG) Annual Meeting, Orlando 2008. [2008 ACG Olympus Award and ACG Presidential Award].

• Rohit Gupta, Gang Fang, Blayne Field, Michael Steinbach and Vipin Kumar, "Quantitative Evaluation of Approximate Frequent Pattern Mining Algorithms", In Proceedings of ACM conference on knowledge discovery and data mining (KDD), pp. 301-309, 2008. (Also published as CS Technical Report).

• Gaurav Pandey, Michael Steinbach, Rohit Gupta, Tushar Garg and Vipin Kumar, "Association Analysis-based Transformations for Protein Interaction Graphs: A Function Prediction Case Study", In Proceedings of ACM conference on knowledge discovery and data mining (KDD), pp. 540-549, 2007. (Selected for a Highlight talk at ISMB 2008).

• Rohit Gupta, Tushar Garg, Gaurav Pandey, Michael Steinbach, and Vipin Kumar, "Comparative Study of Various Genomic Data Sets for Protein Function Prediction and Enhancements Using Association Analysis", In Proceedings of the Workshop on Data Mining for Biomedical Informatics (held in conjunction with the 7th SIAM International Conference on Data Mining), Minneapolis, 2007.

• Rohit Gupta, Meenal Chhabra, Michael Steinbach, and Vipin Kumar, "Augmented Phylogenetic Profiles for Predicting Protein Function: A Case Study for Saccharomyces Cerevisiae", In Proceedings of the International Conference on Bioinformatics (InCoB), New Delhi, India 2006 (Poster Presentation).
  

• Benjamin Mayer, Huzefa Rangwala, Rohit Gupta, Jaideep Srivastava, George Karypis, Vipin Kumar, Piet de Groen, "Feature Mining for Prediction of Degree of Liver Fibrosis", In Proceedings of the Annual Symposium of American Medical Informatics Association (AMIA), Washington D.C, USA, pp. 1048, 2005 (Poster presentation).

• R. Gupta, V. Venugopal, E. Foufoula-Georgiou, "A Methodology for Blending Multi-Sensor Measurements to Produce 3-Hourly Global Precipitation Estimates", [Abstract], Geophysical Research Abstracts, Vol. 6, 06652, 2004 (Selected for oral presentation in EGU General Assembly, France 2004).

• R. Gupta, V. Venugopal, E. Foufoula-Georgiou, "Expectation Maximization Algorithm Based System Identification of Multiscale Stochastic Models for Scale Recursive Estimation of Precipitation: Application to Multisensor Data Fusion and Model Validation", [Abstract], Eos Trans. AGU, 84(46), Fall Meet. Suppl., Abstract H11F-0908, 2003 (Selected for poster presentation in AGU annual meeting, San Francisco, 2003).

• Gupta, R., Amin, S., "Artificial Neural Network based Decision Support System for Road Maintenance", In Proceedings of the International Structural Engineering Convention, India, pp 511-520, 2001. [Best student paper award].

• Amin, S., Gupta, R., Saha, A., Arora, M., Gupta, R.P., "Genetic Learning Artificial Neural Network for landslide hazard zonation of Bhagirathi valley area in Himalayan region", In Proceedings of the National Workshop on Application of Rock Engineering in Nations Development, India, pp. 203-215, 2001.

• Rohit Gupta, "Data Mining Techniques for Discovery of Clinical and Genomic Markers", PhD Thesis, to be submitted to the Department of Computer Science at the University of Minnesota USA in August 2010. (In Preparation).

• Rohit Gupta, Navneet Rao, Vipin Kumar, "A Novel Error-Tolerant Frequent Itemset Model for Binary and Real-Valued Data", CS Technical Report 09-026, University of Minnesota, 2009.

• Gupta, R., "Parametric and Non-parametric Approaches for Validation and Blending of Multi-Sensor Precipitation Estimates", M.S Thesis, submitted to the Department of Civil Engineering, University of Minnesota, USA in June 2004.

• Gupta, R., "Design (geometrical, structural & economical) of 4-lane elevated highway through Roorkee on NH-58 to ease traffic flow between Delhi and Hardwar", B.Tech Thesis, submitted to the Department of Civil Engineering, IIT Roorkee, India in June 2002.

• Gupta, R., Amin, S., "Application of Artificial Neural Network and Genetic Algorithms in Infrastructure Management System", Examenserbeta Thesis (ISRN KTH/VT/AR – 01/01SE), submitted to the Department of Infrastructure & Planning, The Royal Institute of Technology (KTH), Sweden in July 2001.

• Gupta, R., "Design and Construction aspects of radiation shielding structures for electron accelerator facilities at CAT", Project Report, submitted to the Center for Advanced Technology (CAT), Department of Atomic Energy, Government of India, 2000.