Rui Kuang

Rui Kuang

Associate Professor of Computer Science and Engineering
Adjunct Professor of Biomedical Informatics and Computational Biology
Adjunct Professor of Health Informatics

Office: 5-215 Keller Hall
Phone: (612) 624-7820
Fax: (612) 625-0572
Email: kuang at cs.umn.edu
Address: 4-192 Keller Hall, 200 Union Street SE,
Minneapolis, MN 55455

My broad research interests are in computational biology, biomedical informatics and machine learning. My lab focuses on developing machine-learning algorithms for problems in cancer genomics, biological network analysis and protein function/structure analysis.

Recent Publications

  • Huanan Zhang, Ze Tian and Rui Kuang , Transfer Learning Across Cancers on DNA Copy Number Variation Analysis, [Paper] Proc. of IEEE International Conference on Data Mining (ICDM), In Press, 2013
  • Jeremy R Chien, Rui Kuang, Charles Landen and Viji Shridhar, Platinum-Sensitive Recurrence in Ovarian Cancer: The Role of Tumor Microenvironment, [Paper], Front Oncol. 2013; 3: 251.
  • Hong Cai1, Changjin Hong2, Timothy G Lilburn3, Armando L Rodriguez1, Sheng Chen, Jianying Gu, Rui Kuang and Yufeng Wang, A novel subnetwork alignment approach predicts new components of the cell cycle regulatory apparatus in Plasmodium falciparum, [Paper], BMC Bioinformatics 2013, 14(Suppl 12):S2.
  • Wei Zhang, Takayo Ota, Viji Shridhar, Jeremy R Chien, Baolin Wu and Rui Kuang, Network-based Survival Analysis Reveals Subnetwork Signatures fro Predicting Outcomes of Ovarian Cancer Treatment, [Paper] [Download], PLoS Computational Biology, 9(3):e1002975, 2013
  • Tae Hyun Hwang, Gowtham Atluri, Rui Kuang, Timothy Starr, Kevin AT Silverstein, Peter Haverty, Zemin Zhang, and Jinfeng Liu, Large-scale Integrative Network-based analysis Identifies Common Pathways Disrupted by Copy Number Alterations across Cancers, [Paper] BMC Genomics, 2013 14:440, 2013
  • Ze Tian, Huanan Zhang and Rui Kuang, Sparse Group Selection on Fused Lasso Components for Identifying Group-specific DNA Copy Number Variations, [Paper] Proc. of IEEE International Conference on Data Mining (ICDM), page 665-674, 2012 (Best Student Paper)
  • Hwang, TaeHyun; Atluri, Gowtham; Xie, Maoqiang; Dey, Sanjoy; Hong, Changjin; Kumar, Vipin; Kuang, Rui, Co-clustering Phenome-genome for Phenotype Classification and Disease Gene Discovery, [Paper][Download] Nucleic Acids Research, 40(19):e146, 2012
  • Wei Zhang, Nicholas Johnson, Baolin Wu and Rui Kuang. Signed Network Propagation for Detecting Differential Gene Expressions and DNA Copy Number Variations, [Paper] Proc. of ACM Conference on Bioinformatics, Computational Biology and Biomedicine (ACM BCB), 2012

The views and opinions expressed in this page are strictly those of the page author.
The contents of this page have not been reviewed or approved by the University of Minnesota.