• Approximation of Protein Structure for Fast Similarity Measures
  • Finding the Consensus Shape for a Protein Family(2002)L. Paul Chew
  • CTSS: A Robust and Efficient Method for Protein Structure Alignment Based onLocal Geometrical and Biological Features (CSB03)
  • MASS: multiple structural alignment by secondary structures  (Bioinformatics 03)
  • MINRMS: an efficient algorithm for determining protein structure similarity using root-mean-squared-distance  (Bioinformatics 03)
  • Structural genomics: Computational methods for structure analysis (Protein Science 03)
  • Fast Detection of Common Geometric Substructure in Proteins  (1999) L. Paul Chew
  • Pseudodihedrals: Simplified protein backbone representation with knowledge-based energy
  • Regression Analysis of Multiple Protein StructuresThomas D. Wu, Trevor Hastie, Scott C. Schmidler, Douglas L. Brutlag
  • A Model for Signature Verification (1992) Trevor Hastie and Eyal Kishon ATT Bell Laboratories
  • SSAP
  • Protein Threading Based on Multiple Protein Structure Alignment Tatsuya Akutsu  Kim Lan Sim
  • Secondary Structure Matching (SSM)
  • Computational geometry of protein structure Iosif Vaisman
  • Residue-Based Protein Structure Comparison
  • A New Algorithm For The Alignment Of Multiple Protein Structures Using Monte Carlo Optimization (2001) C. Guda, E. D. Scheeff, P. E. Bourne, I. N. Shindyalov
  • Approximation Algorithms for 3-D Common Substructure Identification in Drug and  Protein Molecules (1999) Samarjit Chakraborty, Somenath Biswas
  • A Novel Approach to Structure Alignment (2000) Mattias Ohlsson, Carsten Peterson, Markus Ringnér, et al.
  • Protein structure alignment by incremental combinatorial extension of the optimal path  IN Shindyalov and PE Bourne (1998)
  • LOCK:  Hierarchical Protein Structure Superposition Amit P. Singh  Douglas L. Brutlag
  • Multiple Structural Alignment and Core Detection by Geometric Hashing Wolfson-Nussinov (Software)
  • Structure-Based Feature Extraction from Protein Databases Gabriela Hristescu, Martin Farach-Colton
  • SSAP: Sequential Structure Alignment Program Willie Taylor and Christine Orengo
  • SCOP: Structural Classification of ProteinsMurzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995)
  • Computational Geometry and 3D Structure in Molecular Biology Klara Kedem
  • Workshop on Computational Protein Structure Analysis
  • Optimal rotation and translation matrices
  • BioInf2052Lectures
  • structural biology
  • Papers on Bioinformatics
  • Protein Docking Using Spherical Polar Fourier Correlations (1999)  David W. Ritchie, Graham J.L. Kemp
  • Estimation and Filtering of Potential Protein-Protein Docking Positions (1998)
  • Computational Analysis of Protein Sequence and Structure Robert Matthew MacCallum (1997)
  • Protein structure comparison and structure patterns Ing Var Eidhammer and Inge Jonassen
  • 3-D Structure in Chemistry and Molecular Biology
  • Shape Analysis of Molecular Surfaces Bruce S. Duncan Arthur J. Olson
  • Protein Docking
  • Molecular surface sequence analysis
  • Automatic identification and representation of protein binding sites for molecular docking
  • Application of Shape Signatures to Identifying Estrogenic Compounds