Searching Protein structures

 

Papers	Date
CTSS: A Robust and Efficient Method for Protein Structure Alignment  Based on Local Geometrical and Biological Features (CSB'03)	09/26/2003
Recognizing the fold of a protein structure (Bioinformatics'03) Andrew Harrison, Frances Pearl, Ian Sillitoe, Tim Slidel,  Richard Mott, Janet Thornton  and Christine Orengo	10/03/2003
Towards Index-based Similarity Search for Protein Structure Databases  (CSB'03)  or  PSI: Indexing Protein Structures for Fast Similarity Search  (ISMB'03)  Orhan  Camoglu, Tamer Kahveci, Ambuj Singh	10/20/2003
Nearest Neighbor Classification in 3D Protein Databases  (ISMB'99) Mihael Ankerst, Gabi Kastenmller, Hans-Peter Kriegel, T. Seidl	10/24/2003
Approximation of Protein Structure for Fast Similarity Measures(RECOM03)	10/31/2003

 
An Efficient Index-based Protein Structure Database Searching Method           Zeyar Aung, Wei Fu, Kian-Lee Tan  (March 26 - 28, 2003)

• Protein Structure Comparison Basis On Structural Classification    KORUS2003

• K2: Protein Structure Comparisons and Their Statistical Significance               Joseph D. Szustakowski and Zhiping Weng

Principles of Protein Structure, Comparative Protein Modelling and Visualisation

Fold Recognition

• Support Vector Machines for Protein Fold Class PredictionFlorian Markowetz etc

• A Discrete Kernel Approach to Support Vector Machine

• Learning in Discrete Domains  COMO

• Multi-class Protein Fold Recognition Using Support Vector Machines and

• Neural Networks (2001)   Chris H.Q. Ding, Inna Dubchak

Searching Sequences

• Searching on the Secondary Structure of Protein Sequences                                         Laurie Hammel, Jignesh M. Patel  (2002)

• An Efficient Index Structure for String Databases (2001)  (10 citations)                Tamer Kahveci, Ambuj K. Singh   The VLDB Journal

Thornton  Group Publications