John V. Carlis

Professor, University of Minnesota


Computer Science Department 4-192EE/CSCI Bldg.
200 Union Street SE
University of Minnesota
Minneapolis
, MN, USA
, 55455
(612) 625-6092
(612) 625-0572 [fax]
carlis@cs.umn.edu


 

Current Teaching

Spring 2009:  CSCI 1901, BICB 8510

Office Hours Spring 2008: 10-11 am Wednesdays, and by appointment


 

BOOK:

Mastering Data Modeling: A User Driven Approach

By   John Carlis and Joseph Maguire

Addison – Wesley, Boston MA, 2001.

 




 

Selected papers

Qingsheng Li, Pamela J. Skinner, Sang-Jun Ha, Lijie Duan, Teresa L. Mattila, Aaron Hage, Cara White, Daniel L. Barber, Leigh O’Mara, Peter J. Southern, Cavan S. Reilly, Christopher J. Miller, Rafi Ahmed, John V. Carlis and Ashley T. Haase, “Visualizing antigen specific and infected cells in situ predicts outcome in early viral infection,” Science, e-pub, March 26, 2009.

Qingsheng Li, Jacob D. Estes, Patrick M. Schlievert, Lijie Duan, Amanda J. Brosnahan, Peter J. Southern, Cavan S. Reilly, Marnie L. Peterson, Nancy Schultz-Darken, Kevin G. Brunner, Karla R. Nephew, Stefan Pambuccian, Jeffrey D. Lifson, John V. Carlis & Ashley T. Haase, “Glycerol monolaurate prevents mucosal SIV transmission”  Nature, e-pub March 4,2009. (A “newsworthy” article).

Griffin TJ, Xie H, Bandhakavi S, Popko J, Mohan A, Carlis JV, Higgins L, “ iTRAQ reagent-based quantitative proteomic analysis on a linear ion trap mass spectrometer,” Journal of Proteome Research. 7(3): 486-98, March, 2008.

Munch K.R., J.V. Carlis, J.V. Pardo, JT Lee, “Bringing functional brain image analysis to the clinician: Initial assessment of an online interactive diagnostic aide,” Computers in Biology and Medicine, 38(2), 155-164, May, 2008.

Qingsheng Li, Lijie Duan, Jacob D. Estes, Zhong-Min Ma, Tracy Rourke, Yichuan Wang, Cavan Reilly, John Carlis, Christopher J. Miller & Ashley T. Haase , “Peak SIV replication in resting memory CD4+ T cells depletes gut lamina propria CD4+ T cells”, Nature, April 28, 2005 [plus a news item about this article].

John Carlis, “Pathways to Success and Pitfalls in Interdisciplinary Scientific Database Research”, IEEE EMB, Nov., 2002.

Joel T. Lee, Kristin R. Munch, John V. Carlis and Jose' V. Pardo, “Internet Image Viewer (iiV)”,  BMC Medical Imaging, forthcoming, 2008

Estes JD, Wietgrefe S, Schacker T, Southern P, Beilman G, Reilly C, Milush JM, Lifson JD, Sodora DL, Carlis JV, Haase AT. “Simian immunodeficiency virus-induced lymphatic tissue fibrosis is mediated by transforming growth factor Beta 1-positive regulatory T cells and begins in early infection.” J Infect Dis. 2007 Feb 15;195(4):551-61. [cover article]

Estes JD, Li Q, Reynolds MR, Wietgrefe S, Duan L, Schacker T, Picker LJ, Watkins DI, Lifson JD, Reilly C, Carlis J, Haase AT. “Premature induction of an immunosuppressive regulatory T cell response during acute simian immunodeficiency virus infection.” J Infect Dis. 2006 Mar 1;193(5):703-12. [cover article]

J. Williams, A. Pusey, J. Carlis, J. Goodall and B. Farm, “Female Competition and Male Territorial Behavior Influence Female Chimpanzee’s Ranging Patterns”, Animal Behavior, January, 2002.

Chen, Jake Yue and John Carlis, “Genomic Data Modeling”. Information Systems, January, 2003.

 

[Other papers can be found via pubmed and other web resources.]

“Design: The Key to Writing (and Advising) aOne-Draft PhD Thesis” by John Carlis.   
Text
 


 

Useful Links


A list of good books


notes from my talk on how to give a talk


notes from my talk on how to be a grad student

 

Upward Links

University of Minnesota

Computer Science Dept.


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The contents of this page have not been reviewed or approved by the University of Minnesota.